PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1271_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 520aa    MW: 57718.1 Da    PI: 6.4632
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1271_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2218.7e-07270291223
                                          EETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                           C++Cgk F+r  nL+ H+r H
  cra_locus_1271_iso_2_len_2384_ver_3 270 FCTICGKGFKRDANLRMHMRGH 291
                                          6*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.47E-5267294No hitNo description
SMARTSM003550.0026269291IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.03269296IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.7E-6270320IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280271291IPR007087Zinc finger, C2H2
SMARTSM0035558318351IPR015880Zinc finger, C2H2-like
SMARTSM0035531356378IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MDPDERQSAK AWTPSGNDVL KNLSMDNQSF IDFGLQQKWE DCSYLGYQSR IEQGFSKFSH  60
QSENSSSVDG SSNSQSKIQG RQDSRMQEAS NSNKMPDWDP KGMLSNLSFL EQKIHQLQGL  120
VQLIVGRRGQ VENQSNELLV QQQQLIIADL TSIIVQLIST AGSLLPSAKH TLSSVSPYVP  180
QFRQFGGSMV PSGTNASSGG GLPQNTVNKV EDQSQEIDLT GHHGTEQNFA VEEHEMKDED  240
DGEEGENLPP GSYEILQLEK EEILAPHTHF CTICGKGFKR DANLRMHMRG HGDEYKTPAA  300
LAKPHKESSS EPALIKRYSC PYVGCKRNKD HKKFQPLKTI LCVKNHYKRT HCDKSYTCSR  360
CHTKKFSVVA DLKTHEKHCG RDKWLCSCGT TFSRKDKLFG HIALFQGHTP AIPMDDSKGS  420
AGTSDGLQSS EAVNKIEQLD FSAQSNIPSG SCFENVMDGK GSVDDPVNYF SPLNFDPSNL  480
SGYQEFPRPS FEDSESSFSF LLSGSAQYDQ KSGRYSGPVI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008237278.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
SwissprotQ9C8N50.0STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLA5BSF50.0A5BSF5_VITVI; Putative uncharacterized protein
STRINGVIT_18s0072g00840.t010.0(Vitis vinifera)